Harmy, don't go making any final encodes just yet: I'm making a list of remaining errors I've spotted in the workprint. Though most of them are relatively minor in the scheme of things, fixing them will go a long way towards a seamless presentation of the movie, and would definitely be worthwhile.
Only a very small number of these would go under the category of 'mistakes' in terms of the work on Despecialization. The majority are problems with the 2004 transfer that have yet to be corrected. Some of them may be a bit difficult to get right, but I don't think any of them are impossible to manage. Given all the amazing work that has been done so far, making these last few fixes would take this project about as close to perfection as it could ever get.
So far I've only listed the first half of the movie, but I'll be going through the second half pretty soon. I've kept comments on the colour timing to a minimum, since for the most part it looks fantastic and I know you're working from the most reliable reference there is, but occasionally issues with the 2004 source creep in and could use some further work.
(Would have posted screenshots, but unfortunately I'm not able to do so, nor to lock in on the exact frame in every instance. Still, I hope that reference to the onscreen timecode will be helpful.)
00:02:27 — White level too low compared to the two previous shots; inconsistency very noticeable in stars and somewhat in rebel ship. Brighten image to match, or matte out ship and brighten stars separately if necessary.
00:03:10, 00:03:29 — White level blown out in background for both shots.
00:03:42 — Red, yellow, and blue lights in background extremely oversaturated throughout this shot. Mike Verta pointed out that they absolutely should not 'pop' out in this way, because it is photographically unrealistic to be so bright through all the obscuring smoke. However, they must be toned down separately without affecting the laser blasts.
00:03:45 — Red lights in background oversaturated.
00:03:52:05 — Background lights behind stormtroopers again extremely oversaturated and pop unnaturally. Will again affect laser blasts unless treated separately.
00:03:53:19 — Red lights behind rebels again very oversaturated and photographically unrealistic. Quite distracting.
00:03:56:11 — Though lasers and flash frames seem appropriately coloured, the explosion on the wall at right of frame still has a very ugly pink appearance. In the 2004 version it was outright purple, so the removal of magenta throughout most of the movie did not completely succeed in correcting this.
00:04:18:15 — Flash frames throughout this shot are still nasty pink rather than red-orange like they are elsewhere. (See above comment for explanation.) Laser blasts also look strange and oversaturated.
00:04:41 — Red reflection on R2 appears strangely 'clipped': flat and without nuance of detail. Same goes for red light above Leia at 00:04:54.
00:06:47 — Noticeable garbage matte around escape pod.
00:07:07 — Stars disappear around escape pod and are slow to reappear after it has moved on.
00:14:22 — Blue panel on escape pod is missing nearly all of its colour, appearing dull grey instead.
00:24:27 (timing approximate) — Noticeable shift in brightness of the left sun near the beginning of this shot.
This is more of a general comment than specific, but starting around the time Ben finds Luke (around 28 minutes in, and going until the end of the scene), most of the shots still look too desaturated. I recall the Technicolor image posted by Mike Verta having significantly stronger yellow levels than anything seen here. Also, Ben's cloak often looks too dark, closer to black than brown.
00:32:02 — I couldn't catch the exact timing, but early in this shot there is a white flash to the right of frame, which looks out of place amid the clean appearance elsewhere.
When Luke ignites the lightsabre, there seems to be a 'halo' around the blade. Not sure if this is due to compression artefacts or if the GOUT element is interacting strangely with the rest of the image. I don't recall seeing it before.
00:36:39 — This shot of Vader appears oddly desaturated and dull grey. In the previous workprint, this shot had a noticeable green cast to it, which is now gone. Which is correct?
00:39:47 — White levels appear a bit blown out in this shot, particularly in the reflections on the landspeeder.
00:41:51 — There is a lot of frozen grain and/or compression artefacts in the sky in this shot. The stillness of it is distracting.
00:50:51:01 — Though brief, the pink/purple colouring to this explosion is noticeable. The rest of the frame isn't so bad, though. This happens a couple times earlier in the shootout, also, but I couldn't catch the exact timings.
00:54:19 — Death Star's laser blast seems to lean too much towards blue-green in this shot, rather than just being green. Death Star itself has a slight pink tint, which looks . . . odd.
00:54:25 — Creatures on game board seem oversaturated with pink and purple; inconsistent with other shots. Would require separate adjustment to avoid affecting lightsabre.
Anything I haven't commented on here, of course, looks absolutely wonderful and impressive. ;)