As far as Mokushiroku, I will only be including segments. The digital version I have had some other stuff added onto the beginning that's not part of the original tape but it seems to be missing a couple of other non-movie-related segments in the process. If I can get a better digital transfer off of the original tape, it might be a project on it's own.
As far as the lines in that pan, fixing them isn't difficult, just time consuming since I would have to edit them out frame-by-frame. I've considered a couple of more involved projects for later, including an enhanced version of the movie that fixes most of the fixable animation errors and maybe a restoration of the "Transformers The Movie: Reconstructed" video without all the blended fields, so maybe I'll leave them in this version since they would have been in the original presentation, and remove them for a later project.
I'm in the process of assembling all the slideshow galleries now. I have a lot of material to compile, so it's taking a while.