I watched this back to back with the radical re-edit, so I apologise if I confuse any of the alterations here.
First off - very good job. It speaks volumes that a film can have its running time halved and feel like nothing much is missing - indeed, if anything I think you could have been even harsher with the cuts made. The pacing seemed about right and the cut improved the overall impression of Anakin greatly, especially during the pod race and the final attack on the control ship.
Things I would have tweaked further (had I the technical capabilities):
(1) I'd have given Nute Gunray and co a dubbing, and tweaked their dialogue a little, and I'd have done the same with what was left of Jar-Jar. Their accents are awful so it would be fixing two problems at once giving them alien dialogue. I'd also try to lose the "are you brainless" line from Qui-Gon. It seems totally out of character (the same applies to the "another pathetic life form comment from Kenobi).
(2) I'd have ditched the "are you an angel" conversation Anakin has with Padme. I'd have also dumped the line about "mom, you always say the biggest problem in the universe is...". It's dreadful and would be easy to cut.
(3) I'd have switched in the CGI Yoda, replacing the puppet.
(4) I'd have dumped the bit where they use grappling hooks.
(5) I'd have left at least some of the Qui-Gon funeral footage in.
One drawback of cutting the whole Gungan part in the battle out is that you can't really leave in the final celebration scene, which I always thought was quite a nice mirror image of the ending of ANH (AOTC does the same in mirroring TESB).
As I said initially though, the cut was remarkably well done, and a lot of the editing decisions clearly aren't black and white. The more of these fan edits I'm watching (I think I've seen five or six of TPM now) the more I'm beginning to realise just how poor a movie it is. The fact that you can produce something remotely watchable from the original mess of a film is a credit to you.
Thanks for making it available. :)