The last known edition of Toy Story and Toy Story 2 to have the original Walt Disney pictures logo are the 2005 DVD editions as far as I know, which I’ve ripped onto my computer. The changing of the logo is so egregious for Toy Story in particular, as the logo segues into Andy’s bedroom wallpaper. That really bothered me when I went to see the 3D re-release back in 2010. It’s so shoddily plastered over!
I’m glad I found this thread, I genuinely thought I was the only one bothered by this disturbing trend in re-releases.