Well as I mentioned before, it could be that either they A.) didn't care (somewhat likely) B.) by that time they had moved on to more neutral color palettes in movies (only for the teal/yellow to return years later) This is sort of backed up by the fact that the shots dont look nearly as blue and grimy as raiders on dvd does.
edit: another thing I noticed, note how the temple of doom seems to use backround elements to create color shades more so than say Raiders. For example the shot with the heart pulling ritual has a lot of backround red, and the shot behind the opening title also has some red actually in the backround. They might have relied less on photochemical mood colors and used backround objects instead (Which is my favourite method of doing colors in scenes)
edit2: even more evidence of this in empire strikes back, it had a lot of orange and blue lighting in the carbonite freezing room. This seemed to me to be actual lighting vs photochemical enhancement.