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Help Needed with Extracting Despecialized Edition MKVs

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Recently, I've been trying to get Harmy's Despecialized Editions onto Blu-Ray. I've used AVCHDCoder, and tsMuxer to try and convert the MKV files to a BD compatible format. However, both run into errors when trying to open the file. If I can get the MKVs into a HQ format, I plan to burn the BD via Adobe Encore.

Does anyone know a way to convert the Despecialized Edition MKVs to an Adobe Encore-friendly format without loss of quality? 

"And in the end, all the computers in the world can't generate the most basic thing that a movie needs: an emotional connection with the audience." -Harry S. Plinkett on the Star Wars Prequels