I think that one of the best thing to do is to make anakin's character more splintered. It would support statements made by Vader in ROTJ like "That name no longer has any meaning." I always thought that that line was the Vader personality trying to keep the Anakin personality in check or something. Make it almost as if a singular event has such a strong impact on him that it fractures his personality. It would actually have been better if you saw this in the middle of AOTC.
This could also re-enforce obi-wan's statements to luke about his father.