Even if having the theatrical versions as THE versions again finally means some inconsistencies with the Prequel Trilogy. That’s fine.
What inconsistencies are there, really though? The 2004-11 SEs certainly made some harder links to the PT, but generally weren’t ‘fixing’ things.
There’s the Emperor’s look. But his face doesn’t really look anything like his RoTJ face, even in the SE. And the dialogue kind of breaks the logic of the film’s premise. So, I think that cancels out. There’s Boba’s voice. But developing a different accent is possible. Even two of the three clones shown in Rebels had unique voices, I think.