I liked it too but I still prefer to think of Dooku not actually being a Sith Lord but rather a Jedi that knows the reality of the situation but isn't believed so is trying to do something about it on his own and in the process being manipulated into aiding Palpatine.
It's makes him into a more noble and tragic figure of pathos.
A bit of a Cassandra if Star Wars is going to play on myth.
I would have him appear as a hologram in TPM assessing a similar situation to the Naboo crisis on one of the other later Separatist worlds opening the scope so it wasn't an isolated case.
I'd have plead with the council to send more people with Qui-Gon and have him hanging around outside his funeral with bitter look on his face.
Not a fan these inquisitor chaps myself.
Either get off the can or Sith that's what I say :-D