Puggo - Jar Jar's Yoda said:

Deshaker has a ton of tunable settings. I sometimes set the maximum movement to a very small number, and I also limit the motion sensing area to a portion of the screen that I know doesn't have any action in it.

FWIW: I spoke with the author of deshaker sometime back regarding fixing the gate weave in the GOUT. His assessment (after I sent him a sample) was that another tool would probably be best to deal with the kind of slight subpixel motion that gate weave introduces.