Harmy said:

How about cutting one frame from the end of one shot and the other from the beginning of the next - that should minimize the damage.

Since you're cutting video to match the audio track, I would suggest using the audio as your point of reference. I don't have a copy of the scene in front of me to review, but I think all you have to deal with is ambient noise. There should be a noticeable change from the sounds of the carbon freeze chamber to the inside of the tunnel, so you could cut the frames to make sure the video changes with the sound, regardless if which scene(s) the two frames come from. From that point, the sync should be maintained for the rest of the film (in theory, that is).