Here you will find all of the scripts necessary to generate the "COLD" files from the source files.
You will also need:
The 2004 DVD R1 NTSC release. (I used DGINDEX with forced film selected to IVTC)(This requires that you first extract the correct PGC for the english crawl or you'll get intertwining crawl languages because of the different angles)
The 2006 R1 NTSC Bonus Discs.(I used DGINDEX with forced film selected to IVTC)
The HF9G JSC raw captures.
The HF9G 97SE raw captures.