What are you using for the conversion? It looks far too good to be anything automated. I know the ins and outs of stereo 3d too and generally rely on Mocha for After Effects which I find works out fairly well. As for the comment on anaglyph 3d. I honestly don't understand the hatred for it. On it's own it does destroy the colors, but it only takes a usually fairly simple color correction to fix it. Nobody's going to be watching it without the glasses anyways. Granted, it will never look as good as polarized, but I think anaglyph 3d is perfectly viable for home viewing, and I'm sure the members of the community without a 3d tv would appreciate an anaglyph version of this as well when you get around to it. If not I could probably do it in After Effects (I did the same thing with a Jurassic Park 3d blu ray rip). But all that aside, this is a very ambitious project that I will be following with great interest.