This has more to do with the comic tie-in than the movie itself but....WHY WAS MUDD A BAJORAN LADY???? I mean, April mentions her father being just as bad as her so this is probably his kid but....that really felt rebooty and not alternate timeliney. Though that is a fun explanation for his earring. =P

So, the whole film and comics being tied together seems to be out the airlock. What with the number of the deaths in the comic and yet Kirk claiming he hasn't lost anyone during his time in command.

Secondly, and most weirdly was the Gorn. They were just introduced in the game as intergalactic baddies and yet here in the film Bones claims he once performed a caesarean section on one. 005, was that in the game? If not, what the heck?!?