If anyithng, I would say the clone troopers glowing is inconsistent with the stormtroopers not glowing. Not the other way round.
That is to say... I think about the stormtroopers battling on the Blockade Runner, and then I think about the clone trooper army battling droids on Geonosis... and the OT rings superior in believability and realism to me.
It is a pretty cool idea, though.