I was thinking of making it seem that Anakin was more like Asoka's Mentor as oppose to Master (much like Obi-wan is to Anakin). It really depends on what material is available in future episodes, but it would be great if it could be made to look like Obi-Wan is/was her master directly, to suggest he would have had more (ie Darth Vader later on)

Have you seen these before? There are a few floating around on various forums and blogs -

http://dauntlessmedia.net/starwars/clone-wars/episode-timeline.html

One story I'd love to interweave is the Domino Squad clones. I'm really hoping that there may be an episode in the future focused on Fives.

There is also the option of redubbing/switching lines of characters, and swapping the music in places. If Grevious could be silenced, or redubbed with the Battle droids it would be awesome.