best version is subjective
BD is HD o/c. but has edits to video and audio.
the 3xDVD R2J set has the Theatrical Cut and the cut with Flashback 2012 mixed into the film, plus an extras disc. The cut with Flashback cut in is also HD remastered, just a different master than the BD, and also the retail is o/c SD, also the Theatrical Cut is not remastered, probably the same as earlier DVD releases (?). it is also probably now OoP. Theatrical Cut is non-remastered but has LPCM audio. HD remastered Flashback longer cut is DD audio (don't know bitrate offhand).
It is partly b/c different masters in video which will make upscaling the edited frames from DVD to BD fanedit more difficult. and restoring audio edits won't be easy especially for anyone wanting to unedit the 5.1 track on the BD