Idea about Jango and the assassination plot:

Any reason Zam needs to stay in the movie at all?

What about cutting out the worm assassination attempt and ensuing chase out all altogether?

General order of events:

(Seciors has a great new intro idea for Ep 2 over at fanedit.org - have the movie start with Count Dooku and the Emperor)

landing dock assassination attempt
Padme deleted scene addressing the Senate
Obi and Anakin scene in front of the Jedi Council being tasked to investigate the threat, and for Anakin to protect Padme
Anakin and Padme packing scene (need re-introduction just before this scene?)
Anakin and Padme departure scene - instead of registered transport, they board a different ship (idea to come below)
As they are leaving, Jango shows up just outside the Coruscant atmosphere to shoot them down - Anakin shows off his flying skills and blasts into hyperspace just in time - should be easy Aalenfae! XD
Obi deleted scene of analyzing the toxic dart - redubbed to say "unusual shrapnel found at the Senator's landing dock"

Continue from here...

These wouldn't be all the scenes, just a general flow.

Aalenfae, love the idea that you're working on more than just Ep 3! Your work has all been great! Thanks!