Here's what I would do. Firstly, this series would be much darker in contrast to the actual PT that we got. In fact it might even be a little bit darker than the OT. My edits might have flaws but I never said I was perfect. Since these are going to be kind of long I'm going to do one episode at a time so grab some Cheetos and enjoy. Here goes:
Episode I: The way I see it, Coruscant (not sure if I spelled that correctly or not) should not have the only Jedi Temple in existence. Think about it. The Jedi are known as the peacekeepers of the entire galaxy and there's just one temple they are trained in? Granted it's in the largest planet in the SW universe but still, it would get pretty crowded if this is where EVERY Jedi from EVERY planet trains. That's like having only one police station in America, but on a grander scale. So what I propose is why not have small Jedi Temples in all of the planets but the one on Coruscant is the main temple because that's where the most famous Jedi, Yoda and Mace Windu teach. Anyway, Yoda learns that the Jedi from the temple in Tatooine has been corrupted and sends his two Jedi, Qui Gon Jinn and his padawan Obi Wan Kenobi (yeah skip over that confusing Naboo stuff and get right to Tatooine). When they go to investigate, they get a less than hospital welcome from Jedi Knight Nute Gunray (yes you read that right) and Obi Wan and Qui Gon find themselves outnumbered by attacking Jedi. While on the run they meet up with Anakin, not a boy but a man approximately 18 years of age who does not ask questions but rather says "come with me." He then rushes into a cave and uses the force to barricade the entrance and the Jedi run right past them (because they have been corrupted, their powers in the Force are not as strong so they cannot sense where they are). Qui-Gon whispers to Obi, "the force is strong with this one." While in the cave it is established that Anakin lives alone with his mother and that he wishes to battle against the Jedi who have bullied the common people. OWK and QGJ tell Anakin that is not the way of the real Jedi and the convince him to come with them to train to be a real Jedi (that's right no age restrictions in my version and there really shouldn't be if Yoda can train a 20 something Luke to be a Jedi in fact in my version it's just the opposite, if a Jedi sees a force potential recruit they try to sign him up like a military recruiter). So they go back to the Coruscant Jedi Temple and give a report to Yoda, and they decide to travel to Naboo to meet up with Senator Padme to see if she knows something. On the way there they are attacked by a enemy spacecraft bearing markings of Sith, a cult thought to be long-dead. After a lengthy battle they meet up with Padme and come to the conclusion that some Jedi have been corrupted by the Sith and have separated from the original Jedi order, and are now known as Separatists Jedis. OWK and QGJ decide to try to locate the Sith. They eventually meet up with Darth Maul... same fate as in the original PT. QGJ is now dead (only he doesn't say anything about Annakin being the chosen one). Meanwhile, Anakin and Padme start to have an immediate attraction and it is developed over the course of the movie as well as him having premonitions about his mother. After OWK returns and tells Anakin QGJ's fate, Anakin shows almost no remorse and instead insists that he must go back to Tattoine. OWK says no but after much stalling decides to relent and eventually goes back only to find that Shmi (Anakin's mom) has died. Anakin silently blames OWK and confesses all this to Padme breaking down and Padme consoles her and it is then established that Padme has feelings for Anakin as well however Jedi are not permitted to marry so they must keep their love for each other a secret. That just about wraps up the rough draft I have for the revised episode one. What do you guys think?