Sorry if you're already on top of this, but since I used Vobblanker myself recently to do the same thing (only with DJ's v3 video) I might be able to save you a couple of further headaches when it comes to recombining!
The original GOUT video has 53-54 cells - that's 50 'reported' chapter headers (i.e. the ones you see in the menu), one unreported (which amounts to the last couple of seconds of the end credits), and a couple of split chapters (sometimes to assist with the chapter break, sometimes for no good reason!)
Since VB replaces video by matching cells, you need to make sure your own video has the same number - this doesn't appear to be as simple as remuxing the original celltimes with your video, however, since the cells should start and end at I frames in the MPEG stream (which will be in different places in your video).
Soooo... you really need to use a simple authoring program to mark your own 51 chapter points in your version (matching those of the GOUT to the closest available frame), export that to a VIDEO_TS folder, then open it in VB to mark the additional cells using the split cells function (using the GOUT cells list as reference - VB gives the clearest view of this in my experience so perhaps open that up for a peek first).
Again, sorry if this is teaching you to suck eggs but I was scratching my head over this for a good while so I thought it might help!