Yeah nicely spotted DarthBO, it's a pity the way that the 'improvements' were made to the films, ILM could have rewinded a few frames to see that they had created continuity mistakes, maybe they did realise and hoped they didn't jarr and that the viewer would be distracted by the Cloud-car flying overhead.
My suggestion is to go back to the original GOUT interior without exterior elements happening through the skylight.
J