Currently on vacation for the holidays, so I'm away from my workstation and unable to physically work on any edits. However, here's more of my thoughts for the V2 cut of SOTOR:

EP1 Chapter
I'll be using the color-corrected video files from my recent V2 of AOTF edit (I just wish the film of EP1 wasn't so damn grainy....)

EP2 Chapter - new changes
1. I'm definitely looking into using the "Droid Analysis" deleted scene - from the work on my more recent edits, I've learned a lot about rebuilding and remaking sountracks, so I'd love to replace the droid's voice and dialogue so that I can change the "toxic dart" into a part of the device that blew up Queen Corde Amidala's ship.
(and if I can include that scene, I'll also be including the "Jedi Library" scene from my EP2 fanedit)

2. Looking into using the delete scene of Obi-Wan and Mace - it does add more charactization to both Obi-Wan and Mace, plus it gives a bit more information on Anakin and how Obi-Wan sees that maybe training him too young has led to his young apprentice becoming a bit arrogant.

3. Not sure if I also want to include the scene of Anakin talking to Padme in her apartment before they leave to Naboo, but if I do, I'll probably keep it the same as I edited it in my EP2 Twilight of the Republic fanedit.

EP3 Chapter - new changes
1. I DO want to give Yoda a purple lightsaber, which would again serve (as it did in my Prequel trilogy) as a visual symbol that both he and Mace are on the highest level of the Jedi Order (plus then Mace wouldn't be the only one to have a purple lightsaber in the story)

As for Dooku.... I'm still not sure fully sure about it, but I'm probably gonna keep the character a Sith for this fanedit - unlike my EP2 and Ep3 fanedits, we never really learn much about Dooku in the story of SOTOR and turning him into a rouge Jedi like he was in my Twilight of the Republic edit only complicates the story more than it needs to be.