Okay, I just did a quick and dirty edit using Quicktime Player and the Eclipse AVI's.
Here's how the ORIGINAL, UNEDITED episode list plays out:
1 - Fullmetal Alchemist (episode will be removed entirely)
2 - The Day It Began (most, but not all, will be used, just rearranged)
3 - City of Heresy (will be used with minor additions from the first two episodes)
4 - An Alchemist's Distress (will be untouched)
5 - Rain of Sorrow (will be untouched)
6 - The Road of Hope (will be untouched)
7 - The Hidden Truth (will be untouched)
8 - Research Laboratory 5 (will be untouched)
9 - Artificial Feelings (will be untouched)
10 - Separate Ways (will be untouched)
11 - The Miracle At Rush Valley (will be untouched)
12 - One Is All, All Is One (split into two episodes with flashbacks from The Day It Began added)
Beyond that, everything will be the same. The quick and dirty edit I did didn't include the two episodes from the original anime that I'll try to include, but here will be the episode listing with those episodes included, if I can get them to work:
1 - City of Heresy (opens with very short "legless" flashback taken from original first episode - the ONLY part of that episode that will be used - and a short version of the "complete" flashback will occur when Cornello realizes what they've done)
2 - Be Thou For The People (reedited version of FMA1 Youswell mining town episode that introduces Yoki)
3 - The Man With The Mechanical Arm (reedited version of FMA1 train-hostage episode, introduces Mustang, whose Brotherhood introduction is removed with the removal of the first episode)
4 - An Alchemist's Distress (will be untouched)
5 - Rain of Sorrow (will be untouched)
6 - The Road of Hope (will be untouched)
7 - The Hidden Truth (will be untouched)
8 - Research Laboratory 5 (will be untouched)
9 - Artificial Feelings (will be untouched)
10 - Separate Ways (will be untouched)
11 - The Miracle At Rush Valley (will be untouched)
12 - One Is All, All Is One (reedited to include Day It Began flashbacks up until Winry's "We're having stew tonight!" - then cuts to rain flashback from OIA,AIO, which plays out the same until "You might be able to if you ever reach the truth," "Truth" door slams, credits)
13 - The Day It Began (reedited - begins with the full flashback of the actual failed human transmutation, then Mustang meets them, then Ed gets his automail attached, then alchemy exam, then Ed gets his "Fullmetal" title, then it goes back to OIA,AIO where Izumi's flashback happens and she tells the story of her failed human transmutation attempt - episode ends as OIA,AIO originally did.
Beyond this, it will be exactly the same. This would, of course, mean that every episode after this would need to add one number to it (i.e., 13 - Beasts of Dublith would become 14 - Beasts of Dublith), but I won't be releasing edited versions of any episodes beyond City of Heresy, Be Thou For The People, The Man With The Mechanical Arm, One Is All All Is One, and The Day It Began. I'm also not sure what I'm going to do about episode title cards for BTFTP and TMWTMA. And I don't think I'll be creating "fixed" title cards for the episodes beyond #13, so you guys'll just have to deal with there being two Episode 13's. Just look at One is All, All is One and The Day it Began as one hour-long episode, I guess ...