http://trekmovie.com/2009/04/03/trekink-review-crew-2-preview-missions-end-2-news-on-post-st09-comic/#comment-1689281
As the "Star Trek Countdown" prequel was set entirely in the TNG universe, this new book titled "Spock: Reflections" will be the first comic tie-in set in the universe of the new movie. According to Harris, "It looks to be set in the new, post-film timeline established by the rebooted continuity. It should hit shelves sometime around July, just in time for the San Diego Comic-Con."

Trekmovie Comment:
17. Darrksan - April 3, 2009

    “the rebooted continuity”
    I guess that means JJ’s trek is erasing TOS.
    damn it!

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I think darrksan is right and I say damn it too.

the rebooted continuity, I maybe can picture what it is:

ENT-era-----JJ's era------movie era-------TNG-Era