This looks like a really interesting project - hope it comes to fruition. I'd love to see the comics from '77 to '83 in particular. Had some of them here in the UK but would be great to have the whole shebang. Still have some UK versions in the loft... probably covered in pigeon poodoo by now haha!
You may be interested in this for possible ideas on how to proceed:
http://trekmovie.com/2008/08/05/trekink-first-look-at-star-trek-the-complete-comic-book-collection-dvd/
Star Trek in a Star Wars thread?!? Sacrilege - I know I know ;)
- 7FN