I wrote an article on the matrix movies onace and had an idea for an ending to the matrix trikogy (im not sure if this is what you have done sas I have skipped the spoilers).
But what if the whole point of Neo is to balance the equuation (as the architect says) in his speech.
so actually what happens is that each time neo balances the equation the program ends (kind of like a holodeck form star trek) and the universe just reboots. in this case neo could reawaken at the start of the first matrix film again. But its not a dream its just an endles cycle of the quation going out of balance and rebalancing.
in this case Neo becomes a sort of tool of slavery, it seems like he is saving the world but in actuality he is stopping the program from crashing when the humans start to realise their is problem intergral to the problem.
kind of twighlight zoney