I enjoyed your edit of the Dooku scene, and your cuts are very unnoticable (which, as you've said, is a good thing). I did find that the re-ordering of the Palpatine dialog after the duel was a tad abrupt. The part with Palpatine's laugh was also a little rough, since he's not smiling in the long shot you cut to. If you want to tackle a little rotoscoping, adding a smile to the long shot might be possible.
Do you have any plans to change to battledroid voices?