I had a few of these things as ideas in my head for my Transformers disc project. However, mine was more focused on the stuff leading up to the movie. In any case I will be contributing to this thread. I have to go to work now, but when I get home tonight I'll pop in here and post some info.
By the way, the recently released Transformers Movie Special Edition R4 DVD (and original version actually, both) have the Stan Bush music video, however the quality is horrendous. I've seen a much better version floating around on MySpace and have since captured 4 different uploads of it. One or two of those include the Tommy/PM Prime intro.
The above leads me to my last comment til later; I scoured MySpace and captured a bunch of videos I want to use in my project. Having said that, I am of course looking for better quality versions and trying to get in touch with some of the uploaders but I have a few things you'll want.
Will be back in several hours.