Cleaning up blue screen effects shots (e.g. on Hoth), altering the perspective of the cell block corridor, etc. I don't have a big problem with. I liked the introduction of windows in the corridors of Cloud City.
I still haven't watched the 2004 SEs, just the 1997 versions. The one thing I thought would have been done in 1997 and wasn't was putting Ian McDiarmid in ESB. I think it provides some nice continuity between ESB and ROTJ. But I fail to see why the script needed to be altered.
I regard all the other changes as surplus to requirements.