I like the alternate Sail Barge cue as well, also having heard it first in Jedi Outcast. It doesn't re-use the older themes the way the final version does, though Jabba's theme does come in (possibly when Leia is strangling him?). I think the reason they didn't use that was because they kept changing the edit of the whole sail barge sequence, according to Ben Burtt on the commentary, so the music had to be completely redone.
I have that Skywalker Symphony cd as well--it's interesting to hear the various concert arrangements of things that weren't recorded in full for the films. I think the group was only put together for the one recording, wasn't it?