With the prequels, however, large portions of the movie were extensively re-edited *after* the music was recorded. This necessitated the cutting of the music to make it (more or less) fit with the film or, in some cases, replacing the music written for a scene with a cue lifted from another sequence (or even another movie). Mix that with the different priorities that come into play when a sound designer is the editor, and you get a vastly different film-&-music experience.
Contrast this with the chase scene near the end of "E.T." The orchestra's best performance was on a take that was slightly off the timing of the film. Spielberg decided to use the music as it was, and tweaked the film editing to conform it to the score.