Some people are asking for the Special Edition to be included on a bonus Blu-ray when the OUT is released on Blu-Ray, but I find that unlikely. When the restoration that leaked for the 50th anniversary began, they scanned the OCN—the actual camera negative, not the restored Special Edition master (which is an Interpositive). Consequently, not only does it lack the SE scenes spliced in, and the CRI for effects shots and other sources—such as Interpositives (presumably the YCM separation masters)—were scanned, but nothing from the Special Edition.
While the state of the TESB and ROTJ negatives has been left more obscure, we know for a fact that the negative for SW was conformed to the 97 cut, not an interpositive. The 97 scenes were spliced into the negative, I don’t know of many people that would dispute that.
From the leaked documents, we do know however that the negative has now been re-conformed to the 77 cut, and the 97 material has been taken out. As for whether they scanned the 97 material before disassembling, we know that a 4k scan was done back in 2012, and that 4k scans of the 97 cuts for all 3 films already exist at the very least. Whether they choose to release them as bonus features is another matter entirely.