I assume you are mainly focused on Book 6 at the moment, but I just got a chance to start the series and wanted to chime in with my thoughts on the first two books.
Book 1 (9.5/10)
I liked pretty much everything about the first book. The opening cut with the Mythrol, where it cuts to him pretending to use the bathroom, felt a bit weird and didn’t flow well in my opinion, but other than that, I think it works great. Moving the prison break episode to Book 1 (before he saves Grogu) was a smart choice; it keeps the pace of the next book from slowing down and doesn’t hurt the narrative flow at all. The only real issue I found was with the droid picking up the rifle. It felt like he did it for no reason since he was no longer looking for Grogu. Having the droid hear blaster shots or Qin calling for help might help clear up that continuity. Otherwise, Book 1 works incredibly well and is probably my favorite of the two so far.
Book 2 (8/10)
I have a few more glaring issues with this cut, though it is still very well done overall. The Book of Boba Fett material, while definitely less interesting than the Mandalorian’s storyline, is edited together well and never really detracts from the main plot. However, the Mando side of the story has a couple of issues:
The Face Reveal Removal: Removing this scene creates a double problem. First, the cut itself is quite jarring, and it hurts continuity because we don’t see him get the bacta shot. Second, it removes the payoff to Mando’s droid arc for the season. I assume you cut it because you want to save the face reveal for a later book, but I feel there is likely a way to edit around it so that the droid arc is resolved without actually showing his face.
Grogu Healing Greef Karga: Removing this scene makes Greef’s sudden change of heart feel like it comes out of nowhere. Keeping it in would make his turn much more believable.
Overall Thoughts
Aside from those points, most of the cuts are seamless and work beautifully. The story definitely still holds up, but I think a couple of minor tweaks could make it perfect. I am really enjoying the edit so far. It hasn’t lost any of the magic of the original show. I’ll keep sharing my thoughts as I move forward!