Retribution:
It’s a little awkward at first having Kit Fisto showing up be Asajj’s doing, since nothing in the episode proper references it, only the opening text (which most people gloss over). It’s not until you edit in the dialogue later that a connection is established. The feel very separate. I don’t know if there’s anything that could realistically be done to remedy that; is there any reason in particular you felt it worked better here rather than as its original place as the follow up to Assassin?
4:55 If the new plot is that Asajj leaked Grievous’ lair, then why does Fisto not realize until later that that’s what this place is?
11:20 There is a noticeable difference in sound quality where you insert Dooku’s voice referencing Asajj; I assume that it was taken from a clip where he’s in person instead of over a holocall. Adding a bit of distortion might make it fit in better.
15:55 Similar problem as above
The clip of Savage at the end creates a weird pacing issue where we haven’t heard about him at all, and then at the very end of an episode focused on the sisters we suddenly see him again with barely any context. I think it fits far better as the intro to Brothers, as that episode’s focus is on him.
The music at the end over Dooku’s monologue that leads into the credits feels tonally out of place
Monsters:
I guess my only real comment is that by cutting out the episode Bounty, you miss a lot of important character development for Asajj.