"There's always a bigger fish" - the reason this scene sucks in TPM is not only because the same thing happens twice, but because our heroes escape by blind luck. There is never a real sense of danger and Qui-Gon's reaction makes no sense in the circumstances. However, if it could be suggested that Qui-Gon uses the force to influence the "bigger fish" - his line takes on a whole new complexion.
Order of the coruscant scenes - there are good points supporting alternate choices here. I think the only way to know is to cut them in two or three ways, watch them and then decide.
Nute = megalomaniacal Egyptian conqueror sounds good to me. Love those Passion voices.
Title - agree with InfoDroid that it should have one, but also don't like Fate of the Jedi (sorry MTH, that's about the only thing I didn't like
). How about The Chosen One? Maybe not. I know it sounds crazy, but I actually like The Phantom Menace. Just because MagFan and ADM had new titles, doesn't mean you have to. I assume you won't be changing Revenge of the Sith?