Finally got around to watching this and boy it makes a difference. Switching the Padme and Anakin scenes around did wonders. Going from the kiss directly to the balcony scene… just genius.
Taking out all of the Gunray side plot that made no sense whatsoever was also such a good decision.
The movie is kinda watchable and coherent now. Same goes for Episode 1.
The only thing I would change about these is to remove the Grievous conversation with Palps in Episode 3, because that just creates some serious questions. Since you provided the HQ files, maybe I will do that alternate Cut on a rainy sunday afternoon.