One thing that bothers me to no end are the Jedi rat tails, it would almost be worth it to me to eliminate them from every frame of TPM and AOTC...I don't know if this bothers the hell out of anyone else, but I could never stand the look.
I haven't watched TPM for awhile, but I wonder if there is a way to completely eliminate the Gungan battle scenes, removing any reference to it and doing it without without adding subtitles to Jar Jar, since I don't like any of the altered versions of Jar Jar's voice I've heard so far...there are already 3 other action sequences going on at the end of TPM, giving the axe to the Gungan battle would be my preference.