I’ll definitely use these for a rewatch some time! Such a simple idea but really worth it. The re-arrangement ideas really highlight how tight this show was, not a single thing wasted.
I skimmed through to review your connective points, and actually had a few thoughts, though nothing too major. (Movie 2 is flawless on this front)
Something I might miss in this format are the credit drop moments, there’s something about not being able to sit with “Never more than twelve” in Movie 3 that is a little disappointing. There might be a better scene to transition to with more lead time than that Mothma dining room scene though. I was thinking you could switch it out with the scene of Syril in front of the ISB? There is a little more establishing shot and space before Syril stops Dedra. Whereas you currently have Perrin immediately talking over the fading synths from the previous scene. I also think the Vel/Mothma sequence might ramp up to prison break day a little better.
Movie 1’s transitions were the most obvious to me, and this is actually where I would be in favor of cutting ever so slightly more, or finding a new arrangement, at least a tiny bit of the Kenari segment. Maybe even just some rescoring work. I haven’t thought too hard about it yet, but I found both transitions a bit jarring.