well, behind the scenes footage isnt' all inclusive.
going from memory JUST on AOTC:
Jedi Council
Palpatine's Office
Padme's Bedroom
Padme's Antechamber
Padme's Fireplace
Kamino landing platform
Coruscant Landing platform
Dex's Diner
Coruscant Nightclub
Wedding Veranda (not a set but a location shot)
Naboo meadow (Location shot)
Naboo Royal Palace (Location Shot, Caserta Palace)
Yoda's meditation chamber
Lars Homestead
I'm sure there's a couple more, but that's a HIGH number of locations. For Episode III, this goes up even more. Not counting miniatures used as background plates, like parts of the Arena Battle
but NOTHING was untouched by digital effects. by the way the arena model was SCANNED into the computer and filmed that way. lucas does that alot with models which is why they look so fake in the end