I believe that disposing of The Prophecy/The Chosen One is the best change one can make in a PT fanedit, aside from cutting the toilet humor in TPM. I just don’t like retroactively trying to reframe the OT as also part of “Anakin’s saga.” It’s just my preference and if you like the reframing that’s fine with me.
I agree. Over time, I’ve mostly soured on the whole Chosen One prophecy. Both for the reason you mentioned, and also because I think it undermines the ideas of free will that the OT had.