1999 theatrical Phantom Menace is significantly different from the DVD and Blu-Ray versions. Especially Blu-Ray, which is significantly different from the DVD version.
Theatrical TPM has never been released on home video on anything fancier than VHS and Laserdisc, and the DVD version isn’t available officially on anything better than…well, DVD (though Schorman has preserved it in 1080p from HDTV broadcasts).