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Originally posted by motti_soL: he didnt want boba fett to hit threepio... maybe...
If that was of any concern to him, he would have given orders to his troops not to shoot any protocol droids (Hehe, or equip some troopers with Jawa guns). I think if Vader had known that Boba Fett was made from the same "MoJo" as his Stormtroopers, he would probably never have interfered (it's almost a miracle 3P0 was hit in the first place).