This is quite intriguing. I really like the idea of tying together the plot of episode 1 with the rest of the films. Especially bringing Dooku into it.
It is a bit weird to me to see the Clone Wars NOT happen as that is THE war Obi-wan and Anakin fought in… And as much as I love continuity, making a the PT tech look less advanced than the OT tech seems silly to me, as the only reason the OT tech looks the way it does is because of when the films were made, all sci-fi looked like that at the time.
Anyway, good luck with the project!