It would have made more sense for Anakin to desert Padme in his fall to evil, since wife lovin' isn't generally considered an evil act. Anakin and Padme could have just had an argument and Padme could have fled when Anakin started in with the domestic violence, like maybe after he jolted her with force-lightening.
Or Anakin could see the future and in it Padme would be laid out in front of a TeeVee like a beached whale, totally fat and stuffing her face with Bantha Rinds. Anakin confronts her and tells her he's leaving her for a hotter broad, and when Padme tells him she's pregnant, he says, "too bad, bitch, go get an abortion!" Then he force-squeezes her uterus in an attempt to kill her babies. That would be far more EVIL than how he loves her too much in ROTS.