I loved the Locke-Jack discussion on faith. It made a connection to the X-Files. Locke is Mulder, the believer who will stop at nothing to find his truth. Jack is Scully, the doctor who believes science will show the way to his truth.
I think Abrams has become the king of Season Ending Cliffhanger. The best Season Ending Cliffhanger is Star Trek Next Gen's "Best of Both Worlds" with Picard being assimilated and "Mr. Worf, fire.", but Abrams consistantly comes up will great ones.
Felicity Season 1-With whom does she go on summer vacation
Alias Season 1-"Mom?"
Alias Season 2-"You've been missing for three years"
Alias this Season-Vaughn's partial revelation and then car crash
Lost this Season-kidnapping, Sawyer may be dead, Hatch opens, etc.