The insignia change was done in '04. I don’t particularly see them doing a lot of branching options should they do a release. A release with the 2011 version on disc one and the theatrical on disc two would be fine enough for me though the 1997 version would be nice too but I don’t see it. There was only a few changes made in 2011 that honestly I just find it easier to say it’s the same as 2004 so including a branching option of the 2004 and 2011 versions I don’t think is necessary but that’s just me. I just wanna see the original restored regardless of which SE cut it’s put with.
I guess there weren’t too many changes made specifically for 2011 that really stand out. Vader’s “noooooo” is the only thing that really comes to mind, all the other changes were subtle enough that you could mistake them for '04 changes if you didn’t know better (blinking Wicket, Jabba’s door and the dug, etc). On the other hand, if you ditch the '04 version you lose all the permutations of Ben’s krayt dragon call from 77/97 to 04 to 2011.