Here are some of my edits of the scores to the Indiana Jones films, I have only finished TOD, TLC, and KOTCS.

Indiana Jones and the Temple of Doom Complete:
 
  Spoiler:

Disc I (Score):
   01 Main Title and Musical Number/A Tribute To Vernon
   02 The Vial Gangsters/Shish-ka-bob
   03 Once In A Vial/Crash Landing/'Nice Try'/Dashing Through The Snow...
   04 Sivalinga (Alternate)/Sivalinga/Sankara/The Elephants
   05 In Sight of Pankot/'What You Look At'/Pankot Palace/Disgusting Menu
   06 Five Minutes/Assasin!/The Hidden Tunnel/A Spiky Situation
   07 The Temple/Stealing The Stones/The Horrible Secret
   08 Indy's Worst Nightmare/Short Round Houdini/'Indy, I Love You!'
   09 Saving Will/Slave Children's Crusade/The Heroics of Short Round
   10 Rejuvenated and Victorious/The Mine Cart Chase
   11 Water Music/A Little Bridge Music/...../Return to the Village/End Credits
 
  Disc II (Bonus Material):
   12 Willie's Theme (Prauge) 2:00
   13 The Mine Car Chase (Prauge) 3:31
   14 Finale & End Credits (Prauge) 6:29
   15 Water Music (Album) 1:53
   16 The Doom March (Short) 2:04
   17 To Pankot Palace (Film Version) 1:38
   18 Short Round Escapes (Album) 2:22
   19 Will in the Fryer (Replicated Track) 1:36
   20 Parade of the Slave Children (Concert Version) 4:53
   21 Once in a Vial (Album) 1:44
   22 Out Of Fuel (Album) 3:22
   23 Map Extension 0:38
   24 Out Of Fuel (Album With Map Extension) 3:32
   25 Down the Snowback (Original Intro NES Rip) 2:10

Act I
   00 The Crusaders March
   01 Indy's First Adventure
   02 The Boat Scene
   03 Sinister Visitors (Leaked Cue)
   04 The Holy Grail (Leaked Cue)
   05 Father's Study/To Venice
   06 The Library (Film Version)
   07 Beneath The Floors (Leaked Cue)
   08 Kazim and The Rats
   09 The Boat Chase

  Act II
   01 Into Bavaria
   02 Bringing On Father
   03 Discussing the Book (Leaked Cue)
   04 New Ending
   05 Elsa's Betrayal (Leaked Cue)
   06 Market Source
   07 The Capture of Marcus
   08 The Austrian Way
    09 Room In Flames
   10 The Motorcycle Chase
   11 To Berlin
   12 Königgrätzer Marsch
   13 To The Blimp
   14 Intrigue On The Dirigible
   15 Turning Around

  Act III
   01 The Biplane Chase
   02 New Ending
   03 Palace Source
   04 Kazim Meets Max
   05 Death of Kazim
   06 Fix For Bar 65
   07 The Tank Chase
   08 On The Tank (With Inserts)
   09 Indy Vs. Vogel
   10 The Canyon of The Crescent Moon
   11 The Penitent Man Will Pass
   12 The Name of God - The Path of God
   13 The Keeper of the Grail
   14 The Wrong Choice
   15 Letting it Go/End Credits
   16 Death of Kazim (Alternate)

  Act IV (Bonus Material)

Disc 1

  1 The Raiders March
  2 Paramount Pictures
  3 Infiltrating the Warehouse (No SFX!)
  4 "Not As Easy As It Used To Be"
  5 Wubble-U's
  6 Gunpowder
  7 Corpse and Betrayal
  8 Warehouse Escape (One very quiet, far in the background, sound effect)
  9 Doomtown
  10 The Mushroom Cloud (No SFX!)
  11 Spalko's Dossier
  12 Stanforth's Resignation
  13 A Thought for Dad - Enter Mutt
  14 The Legend of the Golden City
  15 A Knife to a Gunfight
  16 A Whirl Through Acadame
  17 Map - To Peru
  18 Nazca Band
  19 Oxley's Cell
  20 The Graveyard - Grave Guardians
  21 Secret Doors and Scorpions - Finding Orellana
  22 Discovering the Skull
  23 Captured - Hypnosis of the Skull
  24 Turning Tables

 Disc 2

  25 The Snake Pit (With Film Ending - SFX)
  26 "They Weren't You"
  27 The Jungle Chase (10:55 edition)
  28 Ants!
  29 Over the Cliff
  30 Behind the Rock - Oxley's Revelation
  31 Ugha Warriors
  32 The Obelisk
  33 Disappearing Stairs - This Way - Treasure Room of the Gods
  34 The Throne Room
  35 Spalko's Gift
  36 The Departure (choral portion included - SFX)
  37 Knowledge Was Their Treasure (VERY BARELY NO SFX!)
  38 The Wedding
  39 End Credits
  40 Irina Spalko [Concert Suite]
  41 The Adventure's of Mutt [Concert Suite]
  42 The Crystal Skull [Concert Suite]
  43 The Raiders March [Concert Suite]
  44 The Secret Revealed Excerpt
  45 Unknown Cue Excerpt
  46 The Crystal Skull (Concert Suite Alternate)
  47 Jungle Chase Excerpt (Alternate Mix)
  48 The Raiders March 29th Anniversary Edit
  49 Marion's Theme
  50 Disappearing Stairs/This Way......SFX Removal Test
  51 Wubble-U's SFX Removal Test
  52 Knowledge Was Their Treasure [Full Stereo - SFX]
  53 Spalko's Dossier [Full Stereo - SFX]
  54 Infiltrating the Warehouse [Full Stereo - SFX]
  55 Gunpowder [Alternate Intro]

Do the normal PM thing for details